PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05170.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 379aa    MW: 41951.5 Da    PI: 10.3031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.4e-36411931128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      lp+G+rF+Ptd+el+ e+L +kv++        ++++ + ik   +i++++P++Lp  v+++  + +fF++++k+y+tg+rk+r+         
  LPERR05G05170.2  41 LPAGVRFDPTDQELI-EHLDAKVKDGGsgahplIDEFIHtIKGEdGICYTHPENLP-GVTKDGLSKHFFHRSAKAYTTGTRKRRKiladqpddq 132
                      799************.99******9997887774444444777756**********.555667799******************88******** PP

              NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +++ +W++tgk++++++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LPERR05G05170.2 133 qaasksthvAAETRWHKTGKTRPIMV-RGQPKGCKKILVLYtnFGKKRKSEKTNWVMHQYHL 193
                      *****988877899************.999***********54479999***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3633212IPR003441NAC domain
PROSITE profilePS5100531.24541212IPR003441NAC domain
PfamPF023653.1E-1642193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNSDVSGSLG TKPDDDHRSS RRCPSCGHDL DCNKTFDMAG LPAGVRFDPT DQELIEHLDA  60
KVKDGGSGAH PLIDEFIHTI KGEDGICYTH PENLPGVTKD GLSKHFFHRS AKAYTTGTRK  120
RRKILADQPD DQQAASKSTH VAAETRWHKT GKTRPIMVRG QPKGCKKILV LYTNFGKKRK  180
SEKTNWVMHQ YHLGELEDEK EGDLIVSKVF YQTQTRSAVV AADLPVARQG GLLHGSVASS  240
GAAMAMNVQR QQHQVLKQAD GQLRPLPTKK RLHEDVVAQV RVNHGGEKRD HRYMPGQRHF  300
SLNLKATPVP TTSSTSSERL SQVSTLTTSI ERHNPLIPVV MGKQLHSPVR QFQSEHLHVG  360
KRFNSSTPKG RLASATLAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422270.0AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankJQ0880960.0JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.11e-176PREDICTED: NAC domain-containing protein 73 isoform X2
SwissprotO494595e-89NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D9WDM10.0A0A0D9WDM1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA018654-PA1e-176(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-90NAC domain containing protein 75